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SRX6477597: GSM3956457: PTC_3_p28; Pteropus vampyrus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 30.6M spots, 6.1G bases, 1.9Gb downloads

Submitted by: NCBI (GEO)
Study: Somatic reprogramming of pteropus bat cells provides new insights in bat antiviral response
show Abstracthide Abstract
Bats are natural reservoirs for a large range of emerging viruses that cause lethal diseases in humans and domestic animals, but remain asymptomatic in bats. Understanding the host-pathogen interactions relies on the availability of relevant models including susceptible cells, derived from viral target tissues. To obtain bat cell types pertinent for the study of viral infection, we applied somatic reprogramming approach to Pteropus primary cells as initial substrates. Using the novel combination of three transcription factors: ESRRB, CDX2 and c-MYC, we generated reprogrammed cells exhibiting stem cells features. Overall design: Pteropus somatic cells from trachea and two different isolates of reprogrammed cells derived from those primary cells were analysed, each in triplicates.
Sample: PTC_3_p28
SAMN12325135 • SRS5127895 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNAs were obtained following Trizol extraction of frozen cell pellets. Libraries were synthesized according to the Illumina procedure by Eurofins genomics from total RNAs.
Experiment attributes:
GEO Accession: GSM3956457
Links:
Runs: 1 run, 30.6M spots, 6.1G bases, 1.9Gb
Run# of Spots# of BasesSizePublished
SRR971989930,560,8416.1G1.9Gb2020-01-02

ID:
8578449

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